Publications

Spatial patterns of tumour growth impact clonal diversification in a computational model and the TRACERx Renal study

Authors (35)

Xiao Fu
Yue Zhao
Jose I Lopez
Andrew Rowan
Lewis Au
Annika Fendler
[...]
Erik Sahai
Kevin Litchfield
Samra Turajlic
TRACERx Renal Consortium
Paul Bates

Nature Ecology and Evolution

Published 1 January 2022

Crick labs/ facilities

Full details

Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment

Authors (109)

Marc F Lensink
Guillaume Brysbaert
Théo Mauri
Nurul Nadzirin
Sameer Velankar
Raphael Chaleil
[...]
Liming Qiu
Xianjin Xu
Shuang Zhang
Xiaoqin Zou
Shoshana J Wodak

Proteins

Published 1 December 2021

Crick labs

Paul Bates

Full details

Toward patient-specific prediction of ablation strategies for atrial fibrillation using deep learning

Authors (9)

Marica Muffoletto
Ahmed Qureshi
Aya Zeidan
Laila Muizniece
Xiao Fu
Jichao Zhao
Aditi Roy
Paul Bates
Oleg Aslanidi

Frontiers in Physiology

Published 1 May 2021

Crick labs

Paul Bates

Full details

Selection of metastasis competent subclones in the tumour interior

Authors (27)

Yue Zhao
Xiao Fu
Jose I Lopez
Andrew Rowan
Lewis Au
Annika Fendler
[...]
Paul Bates
Charles Swanton
Samra Turajlic
TRACERx Renal Consortium
Kevin Litchfield

Nature Ecology and Evolution

Published 1 July 2021

Crick labs/ facilities

Full details

A FIJI macro for quantifying pattern in extracellular matrix

Authors (11)

Life Science Alliance

Published 1 March 2021

Crick labs/ facilities

Full details

Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast

Authors (7)

Tereza Clarence
Xiao Fu
Yasutaka Kakui
Bhavin S Khatri
Christopher Barrington
Paul Bates
Frank Uhlmann

Nucleic Acids Research

Published 22 February 2021

Crick labs/ facilities

Full details

Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage

Authors (8)

Genome Biology

Published 5 November 2020

Crick labs/ facilities

Full details

Allosteric priming of E. coli CheY by the flagellar motor protein FliM

Authors (8)

Paige Wheatley
Sayan Gupta
Alessandro Pandini
Yan Chen
Christopher J Petzold
Corie Y Ralston
David F Blair
Shahid Khan

Biophysical Journal

Published 15 September 2020

Crick labs/ facilities

Full details

A guide for protein-protein docking using SwarmDock

Authors (4)

Iain H Moal
Raphael Chaleil
Mieczyslaw Torchala
Paul Bates

Methods in Molecular Biology

Published 4 July 2020

Crick labs

Paul Bates

Full details

Butyrophilin-2A1 directly binds germline-encoded regions of the Vγ9Vδ2 TCR and is essential for phosphoantigen sensing

Authors (22)

Mohindar M Karunakaran
Carrie R Willcox
Mahboob Salim
Daniel Paletta
Alina S Fichtner
Angela Noll
[...]
Lutz Walter
Mark Jeeves
Fiyaz Mohammed
Benjamin E Willcox
Thomas Herrmann

Immunity

Published 17 March 2020

Crick labs

Paul Bates

Full details

Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock

Authors (7)

Mieczyslaw Torchala
Tereza Clarence
Raphael Chaleil
Patrick Gordon
Francis Russell
Miriam Keshani
Paul Bates

Proteins: Structure, Function, and Bioinformatics

Published 1 August 2020

Crick labs

Paul Bates

Full details

Extracellular matrix anisotropy is determined by TFAP2C-dependent regulation of cell collisions

Authors (9)

Danielle Park
Esther Wershof
Stefan Boeing
Anna Labernadie
Rob Jenkins
Samantha George
Xavier Trepat
Paul Bates
Erik Sahai

Nature Materials

Published 1 February 2020

Crick labs/ facilities

Full details

Matrix feedback enables diverse higher-order patterning of the extracellular matrix

Authors (6)

PLoS Computational Biology

Published 28 October 2019

Crick labs/ facilities

Full details

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

Authors (106)

Marc F Lensink
Guillaume Brysbaert
Nurul Nadzirin
Sameer Velankar
Raphael Chaleil
Tereza Clarence
[...]
Brian Jiménez-García
Charlotte W van Noort
Rodrigo V Honorato
Alexandre MJJ Bonvin
Shoshana J Wodak

Proteins: Structure, Function, and Bioinformatics

Published 1 December 2019

Crick labs

Paul Bates

Full details

Refinement of protein-protein complexes in contact map space with metadynamics simulations

Authors (2)

Erik Pfeiffenberger
Paul Bates

Proteins

Published 1 January 2019

Crick labs

Paul Bates

Full details

The γδTCR combines innate immunity with adaptive immunity by utilizing spatially distinct regions for agonist selection and antigen responsiveness

Authors (16)

Daisy Melandri
Iva Zlatareva
Raphael Chaleil
Robin J Dart
Andrew Chancellor
Oliver Nussbaumer
[...]
Susan John
Salah Mansour
Paul Bates
Pierre Vantourout
Adrian Hayday

Nature Immunology

Published 12 November 2018

Crick labs/ facilities

Full details

Next generation sequencing reveals a novel nonsense mutation in MSX1 gene related to oligodontia

Authors (10)

Ondřej Bonczek
Peter Bielik
Přemysl Krejči
Tomáš Zeman
Lýdie Izakovičová-Hollá
Jana Šoukalová
Jiří Vanĕk
Tereza Clarence
Vladimir J Balcar
Omar Šerý

PLOS ONE

Published 7 September 2018

Crick labs

Paul Bates

Full details

Predicting improved protein conformations with a temporal deep recurrent neural network

Authors (2)

Erik Pfeiffenberger
Paul Bates

PLOS ONE

Published 4 September 2018

Crick labs

Paul Bates

Full details

CHAT gene polymorphism rs3810950 is associated with the risk of Alzheimer's disease in the Czech population

Authors (9)

Alice Hálova
Jana Janoutová
Laura Ewerlingová
Vladimír Janout
Ondřej Bonczek
Tomáš Zeman
Tereza Clarence
Vladimir J Balcar
Omar Šerý

Journal of biomedical science

Published 14 May 2018

Crick labs

Paul Bates

Full details

Flexible protein-protein docking with SwarmDock

Authors (3)

Methods in Molecular Biology

Published 1 April 2018

Crick labs

Paul Bates

Full details

Coronavirus (COVID-19) response

Vacancies

Outwitting Cancer

Coronavirus (COVID-19) research

About us

Bates lab
Biomolecular Modelling Laboratory
: Publications

Lab content

Publications

Year published

Research topics

Publication type

Journal

Spatial patterns of tumour growth impact clonal diversification in a computational model and the TRACERx Renal study

Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment

Toward patient-specific prediction of ablation strategies for atrial fibrillation using deep learning

Selection of metastasis competent subclones in the tumour interior

A FIJI macro for quantifying pattern in extracellular matrix

Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast

Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage

Allosteric priming of E. coli CheY by the flagellar motor protein FliM

A guide for protein-protein docking using SwarmDock

Butyrophilin-2A1 directly binds germline-encoded regions of the Vγ9Vδ2 TCR and is essential for phosphoantigen sensing

Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock

Extracellular matrix anisotropy is determined by TFAP2C-dependent regulation of cell collisions

Matrix feedback enables diverse higher-order patterning of the extracellular matrix

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

Refinement of protein-protein complexes in contact map space with metadynamics simulations

The γδTCR combines innate immunity with adaptive immunity by utilizing spatially distinct regions for agonist selection and antigen responsiveness

Next generation sequencing reveals a novel nonsense mutation in MSX1 gene related to oligodontia

Predicting improved protein conformations with a temporal deep recurrent neural network

CHAT gene polymorphism rs3810950 is associated with the risk of Alzheimer's disease in the Czech population

Flexible protein-protein docking with SwarmDock

The Francis Crick Institute is a unique partnership between

Coronavirus (COVID-19) response

Vacancies

Outwitting Cancer

Coronavirus (COVID-19) research

About us

Lab content

Publications

Year published

Research topics

Publication type

Journal

Publications

Share the page

The Francis Crick Institute is a unique partnership between